Scripts and workflows for bulk RNA-seq, single-nucleus RNA-seq, and machine-learning analyses from our study. Includes nf-core/rnaseq pipeline (STAR+RSEM), DESeq2 normalization and DEG+GO, PCA, heatmaps, volcano plots, scFlow-based snRNA-seq QC & TTRUTH module, and ML with RF/NN + SHAP feature selection. - View it on GitHub